The following resources provide the opportunity for more in-depth exploration of S. Typhi genomic data:
Whole Genome Sequence Analysis (WGSA) is a web application for the processing, clustering and exploration of microbial genome assemblies. It allows users to upload their own data and visualise it in relation to the global Salmonella strain collection. Genotyping, antibiotic resistance data and geographic analysis is also available. Developed by the Centre for Genomic Pathogen Surveillance at the Wellcome Trust Sanger Institute.
Microreact integrates gps data with phylogentic and time-related information in an interactive visualization platform. Developed by the Centre for Genomic Pathogen Surveillance at the Wellcome Trust Sanger Institute.
Genotyphi is a program written by the group of Kat Holt at the University of Melbourne to determine the genotype of S. Typhi samples according to the scheme presented in Wong VK, et al. An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid. Nat Commun. 2016;7:12827 and described here.